{"id":231,"date":"2019-06-27T16:22:24","date_gmt":"2019-06-27T06:22:24","guid":{"rendered":"https:\/\/www.protein.physics.unsw.edu.au\/?page_id=231"},"modified":"2019-07-04T15:06:40","modified_gmt":"2019-07-04T05:06:40","slug":"references","status":"publish","type":"page","link":"https:\/\/www.protein.physics.unsw.edu.au\/?page_id=231","title":{"rendered":"Publications"},"content":{"rendered":"\n

Membrane Remodelling & Metamorphic Proteins<\/h1>\n\n\n\n
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  1. Structural characterization suggests models for monomeric and dimeric forms of full-length ezrin JM Phang, et al, <\/em>Biochemical Journal 473 (18), 2763-2782<\/em><\/li>
  2. Interaction of human Chloride Intracellular Channel Protein 1 (CLIC1) with lipid bilayers: a fluorescence study JE Hare, et al, <\/em>Biochemistry 55 (27), 3825-3833<\/em><\/li>
  3. CLIC1 regulates dendritic cell antigen processing and presentation by modulating phagosome acidification and proteolysis K Salao, et al, <\/em>Biology open, bio. 018119<\/em><\/li>
  4. Members of the chloride intracellular ion channel protein family demonstrate glutaredoxin-like enzymatic activity H Al Khamici et al,<\/em> PloS one 10 (1), e115699<\/em><\/li>
  5. Metformin repositioning as antitumoral agent: selective antiproliferative effects in human glioblastoma stem cells, via inhibition of CLIC1-mediated ion current M Gritti, et al,<\/em> Oncotarget 5 (22), 11252<\/em><\/li>
  6. CLIC proteins, ezrin, radixin, moesin and the coupling of membranes to the actin cytoskeleton: a smoking gun? L Jiang,et al,<\/em> Biochimica et Biophysica Acta (BBA)-Biomembranes 1838 (2), 643-657<\/em><\/li>
  7. Point mutations in the transmembrane region of the clic1 ion channel selectively modify its biophysical properties S Averaimo, et al,<\/em> PloS one 8 (9), e74523<\/em><\/li>
  8. Regulation of the membrane insertion and conductance activity of the metamorphic chloride intracellular channel protein CLIC1 by cholesterol SM Valenzuela,et al,<\/em> PLoS One 8 (2), e56948<\/em><\/li>
  9. Intracellular chloride channel protein CLIC1 regulates macrophage function through modulation of phagosomal acidification L Jiang,et al.,<\/em> J Cell Sci 125 (22), 5479-5488<\/em><\/li>
  10. Transmembrane extension and oligomerization of the CLIC1 chloride intracellular channel protein upon membrane interaction SC Goodchild,et al<\/em> Biochemistry 50 (50), 10887-10897<\/em><\/li>
  11. Structural gymnastics of multifunctional metamorphic proteins SC Goodchild, et al,<\/em> Biophysical reviews 3 (3), 143<\/em><\/li>
  12. Crystal structure of importin\u2010\u03b1 bound to a peptide bearing the nuclear localisation signal from chloride intracellular channel protein 4 AV Mynott, et al,<\/em> The FEBS journal 278 (10), 1662-1675<\/em><\/li>
  13. S-nitrosylation regulates nuclear translocation of chloride intracellular channel protein CLIC4 M Malik, et al,<\/em> Journal of Biological Chemistry 285 (31), 23818-23828<\/em><\/li>
  14. Metamorphic response of the CLIC1 chloride intracellular ion channel protein upon membrane interaction SC Goodchild, et al,<\/em> Biochemistry 49 (25), 5278-5289<\/em><\/li>
  15. The enigma of the CLIC proteins: Ion channels, redox proteins, enzymes, scaffolding proteins? DR Littler, et al,<\/em> FEBS letters 584 (10), 2093-2101<\/em><\/li>
  16. Structure of human CLIC3 at 2 \u00c5 resolution DR Littler, et al,<\/em> Proteins: Structure, Function, and Bioinformatics 78 (6), 1594-1600<\/em><\/li>
  17. Generation and characterization of mice with null mutation of the chloride intracellular channel 1 gene MR Qiu,et al,<\/em> genesis 48 (2), 127-136<\/em><\/li>
  18. Oxidation promotes insertion of the CLIC1 chloride intracellular channel into the membrane SC Goodchild, et al,<\/em> European biophysics journal 39 (1), 129<\/em><\/li>
  19. CLIC1 function is required for \u03b2-amyloid-induced generation of reactive oxygen species by microglia RH Milton, et al,<\/em> Journal of Neuroscience 28 (45), 11488-11499<\/em><\/li>
  20. Comparison of vertebrate and invertebrate CLIC proteins: The crystal structures of Caenorhabditis elegans EXC\u20104 and Drosophila melanogaster DmCLIC DR Littler, et al,<\/em> Proteins: Structure, Function, and Bioinformatics 71 (1), 364-378<\/em><\/li>
  21. Structure of the Janus protein human CLIC2 BA Cromer, et al,<\/em> Journal of molecular biology 374 (3), 719-731<\/em><\/li>
  22. Crystal structure of the soluble form of the redox\u2010regulated chloride ion channel protein CLIC4 DR Littler,et al,<\/em> The FEBS journal 272 (19), 4996-5007<\/em><\/li>
  23. Involvement of the intracellular ion channel CLIC1 in microglia-mediated \u03b2-amyloid-induced neurotoxicity G Novarino, et al,<\/em> Journal of Neuroscience 24 (23), 5322-5330<\/em><\/li>
  24. The intracellular chloride ion channel protein CLIC1 undergoes a redox-controlled structural transition DR Littler, et al,<\/em> Journal of Biological Chemistry 279 (10), 9298-9305<\/em><\/li>
  25. Recombinant CLIC1 (NCC27) assembles in lipid bilayers via a pH-dependent two-state process to form chloride ion channels with identical characteristics to those observed in Chinese hamster ovary cells expressing CLIC1 K Warton, et al, Journal of Biological Chemistry<\/em><\/li>
  26. NCC27 (CLIC1) interacts with artifical bylayer in a pH dependent manner to form chloride ion channels M Mazzanti, et al,<\/em> Biophysical Journal 82 (1), 244A-244A<\/em><\/li>
  27. Crystal structure of a soluble form of the intracellular chloride ion channel CLIC1 (NCC27) at 1.4-\u00c5 resolution SJ Harrop, et al,<\/em> Journal of Biological Chemistry 276 (48), 44993-45000<\/em><\/li><\/ol>\n\n\n\n
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    Nanomachines & Molecular Motors <\/h1>\n\n\n\n
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    1. Construction of a chassis for a tripartite protein-based molecular motor LSR Small,et al., ACS synthetic biology 6 (6), 1096-1102<\/em><\/li>
    2. Motor properties from persistence: a linear molecular walker lacking spatial and temporal asymmetry MJ Zuckermann et al,<\/em> New Journal of Physics 17 (5), 055017<\/em><\/li>
    3. Design and construction of the lawnmower, an artificial burnt-bridges motor S Kovacic et al,<\/em> IEEE transactions on nanobioscience 14 (3), 305-312<\/em><\/li>
    4. Construction and characterization of kilobasepair densely labeled peptide-DNA S Kovacic et al,<\/em> Biomacromolecules 15 (11), 4065-4072<\/em><\/li>
    5. Introducing a Kinesin-Inspired Nanomotor Concept MJ Zuckermann, et al,<\/em> Biophysical Journal 106 (2), 782a<\/em><\/li>
    6. Light Driven Conformational Switching: An Approach to Creating Designed Protein Motion E Bromley,et al,<\/em> Biophysical Journal 106 (2), 244a-245a<\/em><\/li>
    7. Fluidic switching in nanochannels for the control of Inchworm: a synthetic biomolecular motor with a power stroke CS Niman,et al,<\/em> Nanoscale 6 (24), 15008-15019<\/em><\/li>
    8. The Lawnmower: An Autonomous Synthetic Protein Motor L Samii, et al,<\/em> Biophysical Journal 104 (2), 545a<\/em><\/li>
    9. Controlled microfluidic switching in arbitrary time-sequences with low drag CS Niman, et al,<\/em> Lab on a Chip 13 (12), 2389-2396<\/em><\/li>
    10. Squaring the circle in peptide assembly: from fibers to discrete nanostructures by de novo design AL Boyle, et al,<\/em> Journal of the American Chemical Society 134 (37), 15457-15467<\/em><\/li>
    11. The Inchworm: Construction of a Biomolecular Motor with a Power Stroke M Balaz, et al,<\/em> Biophysical Journal 102 (3), 206a<\/em><\/li>
    12. Microfluidic Device for Controlled Fluid Switching to be used with Chemically Powered Molecular Motors on Surface Bound Tracks C Niman,et al,<\/em> Biophysical Journal 102 (3), 717a<\/em><\/li>
    13. Design and construction of a one-dimensional DNA track for an artificial molecular motor S Kovacic, et al, Journal of Nanomaterials 2012, 6<\/li>
    14. Tuning the performance of an artificial protein motor NJ Kuwada, et al,<\/em>Physical Review E 84 (3), 031922<\/li>
    15. Time-dependent motor properties of multipedal molecular spiders L Samii,et al,<\/em> Physical Review E 84 (3), 031111<\/em><\/li>
    16. Simulation Studies of a TRI-PEDAL, Protein-Based Artificial Molecular Motor NJ Kuwada, et al,<\/em> Biophysical Journal 98 (3), 388a<\/em><\/li>
    17. The tumbleweed: towards a synthetic protein motor EHC Bromley,et al,<\/em> HFSP journal 3 (3), 204-212<\/em><\/li>
    18. Synthetic, Protein-Based Molecular Motors NJ Kuwada, et al,<\/em> Biophysical Journal 96 (3), 300a<\/em><\/li><\/ol>\n\n\n\n
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      Non-Trivial Quantum Effects in Biology <\/h1>\n\n\n\n
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      1. Cooperative Subunit Refolding of a Light\u2010Harvesting Protein through a Self\u2010Chaperone Mechanism AJ Laos et al., <\/em>Angewandte Chemie 129 (29), 8504-8508<\/em><\/li>
      2. Vibronic resonances facilitate excited-state coherence in light-harvesting proteins at room temperature F Novelli et al,<\/em> The journal of physical chemistry letters 6 (22), 4573-4580<\/em><\/li>
      3. Spectroscopic studies of cryptophyte light harvesting proteins: vibrations and coherent oscillations PC Arpin et al,<\/em> The Journal of Physical Chemistry B 119 (31), 10025-10034<\/em><\/li>
      4. Polymersomes prepared from thermoresponsive fluorescent protein\u2013polymer bioconjugates: capture of and report on drug and protein payloads CK Wong et al<\/em> Angewandte Chemie International Edition 54 (18), 5317-5322<\/em><\/li>
      5. Disentangling Electronic and Vibrational Coherence in the Phycocyanin-645 Light-Harvesting Complex JA Davis, et al,<\/em> Ultrafast Phenomena XIX, 591-594<\/em><\/li>
      6. Single-residue insertion switches the quaternary structure and exciton states of cryptophyte light-harvesting proteins SJ Harrop, et al,<\/em> Proceedings of the National Academy of Sciences 111 (26), E2666-E2675<\/em><\/li>
      7. Quantum Coherence and its Impact on Biomimetic Light-Harvesting AJ Laos, et al, Australian Journal of Chemistry 67 (5), 729-739<\/em><\/li>
      8. Coherence dynamics in light-harvesting complexes with two-colour spectroscopy GH Richards, et al,<\/em> EPJ Web of Conferences 41, 08009<\/em><\/li>
      9. Excited state coherent dynamics in light-harvesting complexes from photosynthetic marine algae GH Richards, et al,<\/em> Journal of Physics B: Atomic, Molecular and Optical Physics 45 (15), 154015<\/em><\/li>
      10. Electronic coherence lineshapes reveal hidden excitonic correlations in photosynthetic light harvesting CY Wong, et al,<\/em> Nature chemistry 4 (5), 396<\/em><\/li>
      11. Coherent vibronic coupling in light-harvesting complexes from photosynthetic marine algae GH Richards, et al,<\/em> The journal of physical chemistry letters 3 (2), 272-277<\/em><\/li>
      12. Quantitative investigations of quantum coherence for a light-harvesting protein at conditions simulating photosynthesis DB Turner, et al,<\/em> Physical Chemistry Chemical Physics 14 (14), 4857-4874<\/em><\/li>
      13. Flow of excitation energy in the cryptophyte light-harvesting antenna phycocyanin 645 A Marin, et al,<\/em> Biophysical journal 101 (4), 1004-1013<\/em><\/li>
      14. Comparison of electronic and vibrational coherence measured by two-dimensional electronic spectroscopy DB Turner, et al,<\/em> The Journal of Physical Chemistry Letters 2 (15), 1904-1911<\/em><\/li>
      15. Coherently wired light-harvesting in photosynthetic marine algae at ambient temperature E Collini,et al,<\/em> Nature 463 (7281), 644<\/em><\/li>
      16. Phycobiliprotein diffusion in chloroplasts of cryptophyte Rhodomonas CS24 T Mirkovic, et al,<\/em> Photosynthesis research 100 (1), 7-17<\/em><\/li>
      17. Phycocyanin sensitizes both photosystem I and photosystem II in cryptophyte Chroomonas CCMP270 cells CD van der Weij-De, et al,<\/em> Biophysical journal 94 (6), 2423-2433<\/em><\/li>
      18. Ultrafast light harvesting dynamics in the cryptophyte phycocyanin 645 T Mirkovic, et al,<\/em> Photochemical & Photobiological Sciences 6 (9), 964-975<\/em><\/li>
      19. How energy funnels from the phycoerythrin antenna complex to photosystem I and photosystem II in cryptophyte Rhodomonas CS24 cells CD van der Weij-De Wit, et al,<\/em> The Journal of Physical Chemistry B 110 (49), 25066-25073<\/em><\/li>
      20. The photophysics of cryptophyte light-harvesting AB Doust, et al,<\/em> Journal of Photochemistry and Photobiology A: Chemistry 184 (1-2), 1-17<\/em><\/li>
      21. Mediation of ultrafast light-harvesting by a central dimer in phycoerythrin 545 studied by transient absorption and global analysis AB Doust, et al,<\/em> The Journal of Physical Chemistry B 109 (29), 14219-14226<\/em><\/li>
      22. Structural studies of a cryptophyte light harvesting phycocyanin PC645 KE Wilk, et al, T<\/em>he Febs Journal 272, 454<\/em><\/li>
      23. Developing a structure\u2013function model for the cryptophyte phycoerythrin 545 using ultrahigh resolution crystallography and ultrafast laser spectroscopy AB Doust, et al,<\/em> Journal of molecular biology 344 (1), 135-153<\/em><\/li><\/ol>\n\n\n\n
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        Dynamic Pattern Formation in Cells <\/h1>\n\n\n\n
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        1. Non-linear Min protein interactions generate harmonics that signal mid-cell division in Escherichia coli, JC Walsh, CN Angstmann, IG Duggin, PMG Curmi, PloS one 12 (10), e0185947<\/em><\/li>
        2. Developing a genetic manipulation system for the Antarctic archaeon, Halorubrum lacusprofundi: investigating acetamidase gene functionY Liao, et al,<\/em> Scientific reports 6, 34639<\/em><\/li>
        3. Patterning of the MinD cell division protein in cells of arbitrary shape can be predicted using a heuristic dispersion relation JC Walsh, et al,<\/em> AIMS Biophysics<\/em><\/li>
        4. Molecular interactions of the Min protein system reproduce spatiotemporal patterning in growing and dividing Escherichia coli cells JC Walsh, et al,PloS one 10 (5), e0128148<\/em><\/li><\/ol>\n\n\n\n
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          Archaea & Cold Adaptation<\/h1>\n\n\n\n
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          1. Single TRAM domain RNA\u2010binding proteins in Archaea: functional insight from Ctr3 from the Antarctic methanogen Methanococcoides burtonii KS Siddiqui, et al, <\/em>Environmental microbiology 18 (9), 2810-2824<\/em><\/li>
          2. Characterization of a temperature-responsive two component regulatory system from the Antarctic archaeon, Methanococcoides burtonii T Najnin, et al, <\/em>Scientific reports 6, 24278<\/em><\/li>
          3. The RNA polymerase subunits E\/F from the Antarctic archaeon Methanococcoides burtonii bind to specific species of mRNA D De Francisci, et al,<\/em> Environmental microbiology 13 (8), 2039-2055<\/em><\/li>
          4. Chaperonins from an Antarctic archaeon are predominantly monomeric: crystal structure of an open state monomer O Pilak, et al,<\/em> Environmental microbiology 13 (8), 2232-2249<\/em><\/li>
          5. Crystal structure of Lsm3 octamer from Saccharomyces cerevisiae: implications for Lsm ring organisation and recruitment N Naidoo, et al, <\/em>Journal of molecular biology 377 (5), 1357-1371<\/em><\/li>
          6. Structure and function of cold shock proteins in archaea L Giaquinto, et al,<\/em> Journal of bacteriology 189 (15), 5738-5748<\/em><\/li>
          7. Role of lysine versus arginine in enzyme cold\u2010adaptation: Modifying lysine to homo\u2010arginine stabilizes the cold\u2010adapted \u03b1\u2010amylase from Pseudoalteramonas haloplanktis KS Siddiqui,et al,<\/em> PROTEINS: Structure, Function, and Bioinformatics 64 (2), 486-501<\/em><\/li>
          8. 17 Proteins from Psychrophiles R Cavicchioli, et al,<\/em> Methods in Microbiology 35, 395-436<\/em><\/li>
          9. Predicted Roles for Hypothetical Proteins in the Low-Temperature Expressed Proteome of the Antarctic Archaeon Methanococcoides burtonii NFW Saunders, et al,<\/em> Journal of proteome research 4 (2), 464-472<\/em><\/li>
          10. A proteomic determination of cold adaptation in the Antarctic archaeon, Methanococcoides burtonii A Goodchild, et al,<\/em> Molecular microbiology 53 (1), 309-321<\/em><\/li>
          11. An online database for the detection of novel archaeal sequences in human ESTs NFW Saunders, et al,<\/em> Bioinformatics 20 (15), 2361-2362<\/em><\/li>
          12. Pathogenic archaea: do they exist? R Cavicchioli, et al,<\/em> Bioessays 25 (11), 1119-1128<\/li>
          13. Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii NFW Saunders, et al,<\/em> Genome research 13 (7), 1580-1588<\/em><\/li>
          14. Homomeric Ring Assemblies of Eukaryotic Sm Proteins Have Affinity for Both RNA and DNA crystal structure of an oligomeric complex of yeast Smf BM Collins, et al,<\/em> Journal of Biological Chemistry 278 (19), 17291-17298<\/em><\/li>
          15. Crystal structure of a heptameric Sm-like protein complex from archaea: implications for the structure and evolution of snRNPs1 BM Collins, et al,<\/em> Journal of molecular biology 309 (4), 915-923<\/em><\/li>
          16. Cold stress response in Archaea R Cavicchioli, et al, Extremophiles 4 (6), 321-331<\/em><\/li><\/ol>\n\n\n\n
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            Molecular Chaperones <\/h1>\n\n\n\n
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            1. Chaperonins from an Antarctic archaeon are predominantly monomeric: crystal structure of an open state monomer O Pilak, et al,Environmental microbiology 13 (8), 2232-2249<\/em><\/li><\/ol>\n\n\n\n
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              Integrons and Gene Cassette Proteins<\/h1>\n\n\n\n
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              1. Integron gene cassettes: a repository of novel protein folds with distinct interaction sites V Sureshan, et al,<\/em> PLoS One 8 (1), e5293<\/em><\/li>
              2. Crystal structure of an integron gene cassette-associated protein from Vibrio cholerae identifies a cationic drug-binding module CN Deshpande, et al,<\/em> PLoS One 6 (3), e16934<\/em><\/li>
              3. Structural genomics of the bacterial mobile metagenome: an overview A Robinson, et al,<\/em> Structural Proteomics, 589-595<\/em><\/li>
              4. A putative house\u2010cleaning enzyme encoded within an integron array: 1.8 \u00c5 crystal structure defines a new MazG subtype A Robinson,et al,<\/em> Molecular microbiology 66 (3), 610-621<\/em><\/li>
              5. Integron-associated mobile gene cassettes code for folded proteins: the structure of Bal32a, a new member of the adaptable \u03b1+ \u03b2 barrel family A Robinson, et al,<\/em> Journal of molecular biology 346 (5), 1229-1241<\/em><\/li>
              6. In vivo protein cyclization promoted by a circularly permuted Synechocystis sp. PCC6803 DnaB mini-intein NK Williams, et al,<\/em> Journal of Biological Chemistry 277 (10), 7790-7798<\/em><\/li><\/ol>\n\n\n\n
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                Protease Inhibitors and Serpins<\/h1>\n\n\n\n
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                1. Arabidopsis AtSerpin1, crystal structure and in vivo interaction with its target protease responsive to dessication-21 (RD21) N Lampl, et al,<\/em> Journal of Biological Chemistry 285 (18), 13550-13560<\/em><\/li>
                2. Plasminogen activator inhibitor-2 is highly tolerant to P8 residue substitution\u2014implications for serpin mechanistic model and prediction of nsSNP activities DA Di Giusto,et al,<\/em> Journal of molecular biology 353 (5), 1069-1080<\/em><\/li>
                3. Serpins in unicellular Eukarya, Archaea, and Bacteria: sequence analysis and evolution TH Roberts,et al,<\/em> Journal of molecular evolution 59 (4), 437-447<\/em><\/li>
                4. Interaction between the P14 residue and strand 2 of \u03b2-sheet B is critical for reactive center loop insertion in plasminogen activator inhibitor-2 DN Saunders, et al,<\/em> Journal of Biological Chemistry 276 (46), 43383-43389<\/em><\/li>
                5. Crystal structure of the complex of plasminogen activator inhibitor 2 with a peptide mimicking the reactive center loop L Jankova, et al,<\/em> Journal of Biological Chemistry 276 (46), 43374-43382<\/em><\/li><\/ol>\n\n\n\n
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                  \u03b2 Sheet Structures in Proteins<\/h1>\n\n\n\n
                  <\/div>\n\n\n\n
                  1. Twist and shear in \u03b2-sheets and \u03b2-ribbons BK Ho & PMG Curmi<\/em> Journal of molecular biology 317 (2), 291-308<\/em><\/li>
                  2. An analysis of side chain interactions and pair correlations within antiparallel \u03b2\u2010sheets: The differences between backbone hydrogen\u2010bonded and non\u2010hydrogen\u2010bonded residue pairs M. A. Wouters & PMG Curmi<\/em> Proteins. 1995 Jun;22(2):119-31<\/em><\/li><\/ol>\n\n\n\n
                    \n","protected":false},"excerpt":{"rendered":"

                    Membrane Remodelling & Metamorphic Proteins Structural characterization suggests models for monomeric and dimeric forms of full-length ezrin JM Phang, et al, Biochemical Journal 473 (18), 2763-2782 Interaction of human Chloride Intracellular Channel Protein 1 (CLIC1) with lipid bilayers: a fluorescence study JE Hare, et al, Biochemistry 55 (27), 3825-3833 CLIC1 regulates dendritic cell antigen processing and presentation by modulating phagosome acidification and proteolysis K Salao, et al, Biology open, bio. 018119 Members of the chloride intracellular<\/p>\n

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